Variant report

Variant	rs12301524
Chromosome Location	chr12:20944447-20944448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10841618	0.85[EUR][1000 genomes]
rs10841643	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10841646	0.98[ASN][1000 genomes]
rs10841647	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045444	0.85[EUR][1000 genomes]
rs11045449	0.85[EUR][1000 genomes]
rs11045450	0.85[EUR][1000 genomes]
rs11045454	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11045456	0.86[ASN][1000 genomes]
rs11045457	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11045463	0.90[ASN][1000 genomes]
rs11045475	0.91[ASN][1000 genomes]
rs11045498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045499	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11045507	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11045508	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11502651	0.91[ASN][1000 genomes]
rs11502654	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11610333	0.85[EUR][1000 genomes]
rs11613314	1.00[EUR][1000 genomes]
rs11614888	1.00[EUR][1000 genomes]
rs11614998	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12300737	0.86[ASN][1000 genomes]
rs12307809	0.88[AFR][1000 genomes]
rs12310705	0.85[EUR][1000 genomes]
rs12311665	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12312208	0.91[ASN][1000 genomes]
rs12315003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817904	0.85[EUR][1000 genomes]
rs12818427	0.85[EUR][1000 genomes]
rs12819654	0.88[EUR][1000 genomes]
rs12825151	0.96[EUR][1000 genomes]
rs12831914	0.84[EUR][1000 genomes]
rs17617462	1.00[EUR][1000 genomes]
rs34671913	0.98[EUR][1000 genomes]
rs35209399	0.82[EUR][1000 genomes]
rs35589427	0.83[EUR][1000 genomes]
rs35628593	0.84[EUR][1000 genomes]
rs36132437	0.87[EUR][1000 genomes]
rs4373986	0.83[EUR][1000 genomes]
rs56239709	0.90[ASN][1000 genomes]
rs61247324	0.91[ASN][1000 genomes]
rs7314930	0.91[ASN][1000 genomes]
rs7315037	0.91[ASN][1000 genomes]
rs74067212	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs74067215	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7952976	0.82[EUR][1000 genomes]
rs7964797	0.85[EUR][1000 genomes]
rs7968656	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7970323	0.88[AFR][1000 genomes]
rs7978273	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979276	0.88[AFR][1000 genomes]
rs7980917	0.82[EUR][1000 genomes]
rs9804710	0.85[EUR][1000 genomes]
rs9804803	0.85[EUR][1000 genomes]
rs9804804	0.88[AFR][1000 genomes]
rs9805136	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv17347	chr12:20892854-21029179	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1051454	chr12:20893994-20999635	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1040033	chr12:20914439-21078855	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv869995	chr12:20929531-21081863	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv2758297	chr12:20942215-21117820	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2759882	chr12:20942215-21117820	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv427905	chr12:20942215-21117820	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv428275	chr12:20942215-21117820	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20942600-20961200	Weak transcription	A549	lung

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