Variant report

Variant	rs11045450
Chromosome Location	chr12:20915000-20915001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10841618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841647	0.85[EUR][1000 genomes]
rs11045425	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs11045444	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045454	0.93[ASN][1000 genomes]
rs11045456	0.88[ASN][1000 genomes]
rs11045457	0.88[ASN][1000 genomes]
rs11045498	0.85[EUR][1000 genomes]
rs11045507	0.81[EUR][1000 genomes]
rs11045508	0.81[EUR][1000 genomes]
rs11502651	0.84[ASN][1000 genomes]
rs11502654	0.82[ASN][1000 genomes]
rs11610333	0.91[EUR][1000 genomes]
rs11613314	0.85[EUR][1000 genomes]
rs11614888	0.85[EUR][1000 genomes]
rs11614998	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12300737	0.88[ASN][1000 genomes]
rs12301524	0.85[EUR][1000 genomes]
rs12310705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311665	0.82[ASN][1000 genomes]
rs12315003	0.85[EUR][1000 genomes]
rs12817904	0.82[EUR][1000 genomes]
rs12818427	0.82[EUR][1000 genomes]
rs12819654	0.85[EUR][1000 genomes]
rs12825151	0.89[EUR][1000 genomes]
rs12831914	0.99[EUR][1000 genomes]
rs17617462	0.85[EUR][1000 genomes]
rs34100556	0.82[EUR][1000 genomes]
rs34671913	0.83[EUR][1000 genomes]
rs35109738	0.85[EUR][1000 genomes]
rs35209399	0.96[EUR][1000 genomes]
rs35495502	0.82[EUR][1000 genomes]
rs35589427	0.98[EUR][1000 genomes]
rs35628593	0.99[EUR][1000 genomes]
rs36132437	0.84[EUR][1000 genomes]
rs4373986	0.98[EUR][1000 genomes]
rs7133446	0.82[EUR][1000 genomes]
rs71446716	0.82[EUR][1000 genomes]
rs7952976	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7964797	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7978273	0.85[EUR][1000 genomes]
rs7979276	0.98[ASN][1000 genomes]
rs7980917	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955774	0.92[AFR][1000 genomes]
rs9804710	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804803	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804804	0.98[ASN][1000 genomes]
rs9805136	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1039951	chr12:20880417-20941238	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv17347	chr12:20892854-21029179	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1051454	chr12:20893994-20999635	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1040033	chr12:20914439-21078855	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20892800-20922200	Weak transcription	Aorta	Aorta
2	chr12:20913200-20917000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr12:20913600-20915800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr12:20914400-20915800	Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links