Variant report

Variant	rs35628593
Chromosome Location	chr9:90025855-90025856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10841596	1.00[ASN][1000 genomes]
rs10841618	0.99[EUR][1000 genomes]
rs10841647	0.84[EUR][1000 genomes]
rs11045369	1.00[ASN][1000 genomes]
rs11045403	1.00[ASN][1000 genomes]
rs11045419	1.00[ASN][1000 genomes]
rs11045425	0.81[EUR][1000 genomes]
rs11045444	0.99[EUR][1000 genomes]
rs11045449	0.99[EUR][1000 genomes]
rs11045450	0.99[EUR][1000 genomes]
rs11045498	0.84[EUR][1000 genomes]
rs11494687	1.00[ASN][1000 genomes]
rs11608908	1.00[ASN][1000 genomes]
rs11610333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613314	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614888	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614998	0.86[EUR][1000 genomes]
rs12301524	0.84[EUR][1000 genomes]
rs12310705	0.99[EUR][1000 genomes]
rs12315003	0.84[EUR][1000 genomes]
rs12368457	1.00[ASN][1000 genomes]
rs12810377	1.00[ASN][1000 genomes]
rs12815346	1.00[ASN][1000 genomes]
rs12817904	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12818051	1.00[ASN][1000 genomes]
rs12818427	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12819654	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12820092	1.00[ASN][1000 genomes]
rs12822246	1.00[ASN][1000 genomes]
rs12824927	1.00[ASN][1000 genomes]
rs12825151	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831149	1.00[ASN][1000 genomes]
rs12831914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17617462	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34100556	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34274711	1.00[ASN][1000 genomes]
rs34671913	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953944	1.00[ASN][1000 genomes]
rs35069963	1.00[ASN][1000 genomes]
rs35109738	0.86[EUR][1000 genomes]
rs35209399	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35495502	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35589427	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36132437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373986	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133446	0.81[EUR][1000 genomes]
rs71436838	1.00[ASN][1000 genomes]
rs71446716	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71446727	1.00[ASN][1000 genomes]
rs71446729	1.00[ASN][1000 genomes]
rs73082641	1.00[ASN][1000 genomes]
rs73240463	1.00[ASN][1000 genomes]
rs7952976	0.98[EUR][1000 genomes]
rs7964797	0.99[EUR][1000 genomes]
rs7978273	0.84[EUR][1000 genomes]
rs7980917	0.98[EUR][1000 genomes]
rs9804710	0.99[EUR][1000 genomes]
rs9804803	0.99[EUR][1000 genomes]
rs9805136	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869430	chr9:89824318-90592792	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv2758194	chr9:90018727-90424980	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2759703	chr9:90018727-90424980	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:90018400-90026000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:90023000-90041400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:90024800-90026200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:90025000-90029200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:90025200-90026200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:90025200-90028800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:90025200-90029200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr9:90025200-90029800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:90025200-90031600	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr9:90025400-90026200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr9:90025600-90026000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr9:90025600-90027600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:90025600-90028200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr9:90025600-90028400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:90025600-90029200	Active TSS	H1 Cell Line	embryonic stem cell
16	chr9:90025600-90030000	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr9:90025600-90030000	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr9:90025800-90030000	Active TSS	HUES64 Cell Line	embryonic stem cell

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