Variant report

Variant	rs11045419
Chromosome Location	chr12:20885438-20885439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10841596	1.00[ASN][1000 genomes]
rs11045369	1.00[ASN][1000 genomes]
rs11045403	1.00[ASN][1000 genomes]
rs11494687	1.00[ASN][1000 genomes]
rs11608908	1.00[ASN][1000 genomes]
rs11610333	1.00[ASN][1000 genomes]
rs11613314	1.00[ASN][1000 genomes]
rs11614888	1.00[ASN][1000 genomes]
rs12368457	1.00[ASN][1000 genomes]
rs12810377	1.00[ASN][1000 genomes]
rs12815346	1.00[ASN][1000 genomes]
rs12817904	1.00[ASN][1000 genomes]
rs12818051	1.00[ASN][1000 genomes]
rs12818427	1.00[ASN][1000 genomes]
rs12819654	1.00[ASN][1000 genomes]
rs12820092	1.00[ASN][1000 genomes]
rs12822246	1.00[ASN][1000 genomes]
rs12824927	1.00[ASN][1000 genomes]
rs12825151	1.00[ASN][1000 genomes]
rs12831149	1.00[ASN][1000 genomes]
rs12831914	1.00[ASN][1000 genomes]
rs17617462	1.00[ASN][1000 genomes]
rs34100556	1.00[ASN][1000 genomes]
rs34274711	1.00[ASN][1000 genomes]
rs34671913	1.00[ASN][1000 genomes]
rs34953944	1.00[ASN][1000 genomes]
rs35069963	1.00[ASN][1000 genomes]
rs35209399	1.00[ASN][1000 genomes]
rs35495502	1.00[ASN][1000 genomes]
rs35589427	1.00[ASN][1000 genomes]
rs35628593	1.00[ASN][1000 genomes]
rs36132437	1.00[ASN][1000 genomes]
rs4373986	1.00[ASN][1000 genomes]
rs71436838	1.00[ASN][1000 genomes]
rs71446716	1.00[ASN][1000 genomes]
rs71446727	1.00[ASN][1000 genomes]
rs71446729	1.00[ASN][1000 genomes]
rs73082641	1.00[ASN][1000 genomes]
rs73240463	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv557704	chr12:20842041-20893980	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3391629	chr12:20866256-20908722	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1039951	chr12:20880417-20941238	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv826279	chr12:20884730-20885746	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3370935	chr12:20884950-20885502	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3484018	chr12:20884967-20885834	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3484029	chr12:20884967-20885834	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20885400-20885800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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