Variant report

Variant	rs7979661
Chromosome Location	chr12:118256072-118256073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:118218209..118219851-chr12:118255401..118257434,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10431398	0.82[EUR][1000 genomes]
rs10744905	0.86[EUR][1000 genomes]
rs10774956	0.86[EUR][1000 genomes]
rs10774958	0.86[EUR][1000 genomes]
rs10850899	0.86[EUR][1000 genomes]
rs10850901	0.86[EUR][1000 genomes]
rs1318179	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs1374249	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1446420	0.83[EUR][1000 genomes]
rs1446421	0.83[EUR][1000 genomes]
rs1530540	0.86[EUR][1000 genomes]
rs1530541	0.86[EUR][1000 genomes]
rs2047931	0.82[EUR][1000 genomes]
rs2121299	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28713476	0.83[EUR][1000 genomes]
rs4766872	0.82[EUR][1000 genomes]
rs4766875	0.88[EUR][1000 genomes]
rs4766877	0.87[EUR][1000 genomes]
rs4766878	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4766879	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4767614	0.83[EUR][1000 genomes]
rs4767622	0.86[EUR][1000 genomes]
rs4767623	0.88[EUR][1000 genomes]
rs4767624	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4767625	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6490156	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6490157	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7137915	0.83[EUR][1000 genomes]
rs7309508	0.83[EUR][1000 genomes]
rs7314496	0.87[EUR][1000 genomes]
rs7956778	0.83[EUR][1000 genomes]
rs7957795	0.85[EUR][1000 genomes]
rs7958901	0.86[EUR][1000 genomes]
rs7959050	0.86[EUR][1000 genomes]
rs7969359	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7972142	0.82[EUR][1000 genomes]
rs7977016	0.83[EUR][1000 genomes]
rs7978314	0.82[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118253800-118266400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:118254200-118264000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:118254800-118257400	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links