Variant report

Variant	rs6490156
Chromosome Location	chr12:118249043-118249044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10774960	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10850901	0.81[ASN][1000 genomes]
rs1374249	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2121299	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4766878	0.87[ASN][1000 genomes]
rs4766879	0.87[ASN][1000 genomes]
rs4767624	0.80[ASN][1000 genomes]
rs4767625	0.81[ASN][1000 genomes]
rs4767626	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6490157	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7297777	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7297790	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7969359	0.81[ASN][1000 genomes]
rs7979661	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv988370	chr12:118240136-118249923	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6490156	TROAP	cis	Liver	GTEx
rs6490156	PEBP1	cis	cerebellum	SCAN
rs6490156	TBX5	cis	cerebellum	SCAN
rs6490156	RPH3A	cis	parietal	SCAN
rs6490156	ZNF267	trans	parietal	SCAN
rs6490156	RAB35	cis	cerebellum	SCAN
rs6490156	TROAP	trans	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118237200-118254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:118248400-118252200	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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