Variant report

Variant	rs7297790
Chromosome Location	chr12:118236890-118236891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10744905	0.82[EUR][1000 genomes]
rs10774956	0.82[EUR][1000 genomes]
rs10774958	0.82[EUR][1000 genomes]
rs10774960	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10850899	0.82[EUR][1000 genomes]
rs10850901	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1318179	0.82[CEU][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs1374249	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1530540	0.82[EUR][1000 genomes]
rs1530541	0.82[EUR][1000 genomes]
rs2121299	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4766875	0.82[EUR][1000 genomes]
rs4766877	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4766878	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4766879	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767622	0.82[EUR][1000 genomes]
rs4767623	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4767624	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4767625	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4767626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6490156	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6490157	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7297777	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7314496	0.83[EUR][1000 genomes]
rs7957795	0.81[EUR][1000 genomes]
rs7958901	0.82[EUR][1000 genomes]
rs7959050	0.82[EUR][1000 genomes]
rs7969359	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118232600-118246400	Weak transcription	Pancreas	Pancrea
2	chr12:118232800-118239400	Weak transcription	Placenta Amnion	Placenta Amnion

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