Variant report

Variant	rs4767624
Chromosome Location	chr12:118236209-118236210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:118224884..118227594-chr12:118235023..118236649,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10431398	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10744903	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10744904	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10744905	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774953	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10774954	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10774955	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10774956	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774958	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10774960	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10850899	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10850901	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1318179	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1374249	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1446420	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1446421	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1530540	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1530541	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1986790	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2047931	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2121299	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28713476	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4766872	0.89[EUR][1000 genomes]
rs4766873	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4766875	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4766877	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4766878	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4766879	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4767614	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4767616	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4767617	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4767618	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4767619	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4767622	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4767623	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4767625	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4767626	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6490156	0.80[ASN][1000 genomes]
rs7137915	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7138952	0.84[EUR][1000 genomes]
rs7297777	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7297790	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7298137	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7309508	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7314496	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs764402	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7956778	0.90[EUR][1000 genomes]
rs7957795	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7958901	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7959050	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7969359	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7972142	0.90[EUR][1000 genomes]
rs7977016	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7978314	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7979661	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118232600-118246400	Weak transcription	Pancreas	Pancrea
2	chr12:118232800-118239400	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links