Variant report

Variant	rs10774960
Chromosome Location	chr12:118239017-118239018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:118233366..118234895-chr12:118237416..118240307,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10744905	0.82[EUR][1000 genomes]
rs10774956	0.82[EUR][1000 genomes]
rs10774958	0.82[EUR][1000 genomes]
rs10850899	0.82[EUR][1000 genomes]
rs10850901	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1318179	0.83[EUR][1000 genomes]
rs1374249	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1530540	0.82[EUR][1000 genomes]
rs1530541	0.82[EUR][1000 genomes]
rs2121299	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4766875	0.82[EUR][1000 genomes]
rs4766877	0.81[EUR][1000 genomes]
rs4766878	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4766879	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4767622	0.82[EUR][1000 genomes]
rs4767623	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4767624	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4767625	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4767626	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6490156	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6490157	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7297777	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7297790	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7314496	0.83[EUR][1000 genomes]
rs7957795	0.81[EUR][1000 genomes]
rs7958901	0.82[EUR][1000 genomes]
rs7959050	0.82[EUR][1000 genomes]
rs7969359	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118232600-118246400	Weak transcription	Pancreas	Pancrea
2	chr12:118232800-118239400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:118237200-118254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links