The 2.0 version of rSNPBase

Variant report

Variant rs7980927
Chromosome Location chr12:51560305-51560306
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:51504800-51563400 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr12:51513000-51565400 Weak transcription Fetal Lung lung
3 chr12:51519000-51561600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr12:51519000-51565000 Weak transcription Colon Smooth Muscle Colon
5 chr12:51519000-51565200 Weak transcription Left Ventricle heart
6 chr12:51519000-51565200 Weak transcription Pancreas Pancrea
7 chr12:51519000-51565800 Weak transcription Esophagus oesophagus
8 chr12:51519200-51563800 Weak transcription Fetal Brain Female brain
9 chr12:51519200-51565000 Weak transcription Stomach Smooth Muscle stomach
10 chr12:51519400-51565200 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr12:51521600-51565200 Weak transcription HSMM muscle
12 chr12:51527400-51565200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr12:51530600-51564200 Weak transcription Fetal Muscle Leg muscle
14 chr12:51531200-51563400 Weak transcription Hela-S3 cervix
15 chr12:51532000-51565000 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr12:51532400-51564000 Weak transcription Primary T cells from cord blood blood
17 chr12:51532600-51562000 Weak transcription Ovary ovary
18 chr12:51532600-51562800 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr12:51532600-51564800 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr12:51532600-51565200 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr12:51532800-51563600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr12:51533000-51563200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr12:51533200-51561400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr12:51533200-51561400 Weak transcription Placenta Placenta
25 chr12:51533200-51564800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr12:51533600-51564800 Weak transcription Primary hematopoietic stem cells blood
27 chr12:51533600-51565000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr12:51534600-51564200 Weak transcription Fetal Intestine Large intestine
29 chr12:51539600-51565000 Weak transcription Primary B cells from peripheral blood blood
30 chr12:51539800-51561000 Weak transcription Aorta Aorta
31 chr12:51540800-51564800 Weak transcription Duodenum Mucosa Duodenum
32 chr12:51543200-51565200 Weak transcription Psoas Muscle Psoas
33 chr12:51545000-51564200 Weak transcription Brain Germinal Matrix brain
34 chr12:51545000-51565000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr12:51545000-51565000 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr12:51550200-51563200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr12:51550400-51565400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr12:51550800-51564800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr12:51551400-51562400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr12:51552200-51563600 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr12:51552400-51565000 Weak transcription Placenta Amnion Placenta Amnion
42 chr12:51553200-51565000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr12:51554000-51563400 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr12:51554400-51565000 Weak transcription HUVEC blood vessel
45 chr12:51554800-51564200 Weak transcription Primary monocytes fromperipheralblood blood
46 chr12:51554800-51564800 Weak transcription Brain Angular Gyrus brain
47 chr12:51554800-51565000 Weak transcription Brain Inferior Temporal Lobe brain
48 chr12:51554800-51565000 Weak transcription NHLF lung
49 chr12:51554800-51565200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr12:51554800-51565400 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015