Variant report

Variant	rs7985173
Chromosome Location	chr13:67075610-67075611
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67065181..67066891-chr13:67075366..67077021,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1467590	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs1555567	0.83[YRI][hapmap]
rs1932884	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1932885	0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.92[YRI][hapmap]
rs1932888	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1932892	1.00[AMR][1000 genomes]
rs2057460	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2146740	1.00[YRI][hapmap]
rs2146742	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs2224741	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2324911	1.00[AMR][1000 genomes]
rs2324916	1.00[AMR][1000 genomes]
rs2324958	1.00[MEX][hapmap]
rs267311	0.84[LWK][hapmap];1.00[MKK][hapmap]
rs2875479	1.00[AMR][1000 genomes]
rs4141952	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4293259	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4386018	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4394963	0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4427678	1.00[AMR][1000 genomes]
rs4883786	0.83[YRI][hapmap]
rs4884675	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6562456	1.00[MEX][hapmap]
rs6562458	1.00[AMR][1000 genomes]
rs6562461	1.00[MEX][hapmap];0.85[YRI][hapmap]
rs7139879	1.00[MEX][hapmap]
rs7981098	0.91[YRI][hapmap]
rs7988876	0.83[YRI][hapmap]
rs7992981	0.83[YRI][hapmap]
rs7994369	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9529078	1.00[AMR][1000 genomes]
rs9529080	1.00[AMR][1000 genomes]
rs9529101	0.85[YRI][hapmap]
rs9540773	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9540777	1.00[AMR][1000 genomes]
rs9540783	1.00[AMR][1000 genomes]
rs9540811	1.00[AMR][1000 genomes]
rs9540855	0.89[YRI][hapmap]
rs9571591	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs976823	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv915828	chr13:66544825-67212201	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv1051051	chr13:66948744-67126296	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900390	chr13:66990736-67094634	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2757538	chr13:67005812-67119200	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2759943	chr13:67005812-67119200	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2422196	chr13:67041890-67295480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv832639	chr13:67049800-67223701	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67075200-67075800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr13:67075200-67076000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:67075200-67078800	Enhancers	A549	lung
4	chr13:67075600-67075800	Enhancers	HSMM	muscle
5	chr13:67075600-67076000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:67075600-67076200	Enhancers	HSMMtube	muscle

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