Variant report

Variant	rs7986989
Chromosome Location	chr13:50388519-50388520
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs716370	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs7990126	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535343	0.85[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7986989	KPNA3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50383600-50389400	Enhancers	Fetal Heart	heart
2	chr13:50384200-50390200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:50384800-50389600	Weak transcription	Placenta	Placenta
4	chr13:50385000-50389400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:50386000-50390400	Enhancers	HepG2	liver
6	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
8	chr13:50387600-50388800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:50387800-50388600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr13:50387800-50388600	Enhancers	A549	lung
11	chr13:50388200-50389000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:50388200-50389000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:50388200-50390000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:50388400-50388800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:50388400-50388800	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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