Variant report

Variant	rs7990126
Chromosome Location	chr13:50384300-50384301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs716370	0.85[ASN][1000 genomes]
rs7986989	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7990126	KPNA3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50379600-50385200	Enhancers	HepG2	liver
2	chr13:50380600-50384600	Weak transcription	Pancreas	Pancrea
3	chr13:50383200-50387200	Enhancers	Fetal Intestine Small	intestine
4	chr13:50383600-50389400	Enhancers	Fetal Heart	heart
5	chr13:50384200-50390200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links