Variant report

Variant	rs716370
Chromosome Location	chr13:50395570-50395571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12584401	0.80[CEU][hapmap]
rs2236354	0.80[CEU][hapmap]
rs716371	0.82[LWK][hapmap]
rs7986989	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs7990126	0.85[ASN][1000 genomes]
rs9535347	0.80[CEU][hapmap]
rs9535352	0.86[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs716370	KCNRG	cis	cerebellum	SCAN
rs716370	FAM124A	cis	cerebellum	SCAN
rs716370	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50394000-50396000	Enhancers	HepG2	liver
2	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:50394400-50395800	Enhancers	Fetal Intestine Small	intestine
4	chr13:50394800-50395600	Enhancers	Fetal Intestine Large	intestine
5	chr13:50394800-50396200	Enhancers	K562	blood
6	chr13:50394800-50396400	Enhancers	Fetal Heart	heart
7	chr13:50394800-50396600	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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