Variant report

Variant	rs9535352
Chromosome Location	chr13:50386913-50386914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365277..50368611-chr13:50385585..50388603,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1061979	1.00[YRI][hapmap]
rs11148167	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1198323	0.87[ASN][1000 genomes]
rs1198325	0.87[ASN][1000 genomes]
rs1198329	1.00[ASN][1000 genomes]
rs12430539	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12584401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12853861	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs12864534	0.91[AFR][1000 genomes]
rs12866447	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12868235	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12874106	0.92[EUR][1000 genomes]
rs12877931	0.91[AFR][1000 genomes]
rs1535543	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1575387	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1923730	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2236354	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35672544	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3742095	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4603448	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4643206	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4941657	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4942864	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4942869	0.82[ASN][1000 genomes]
rs4942870	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4942871	0.89[ASN][1000 genomes]
rs4942879	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs716370	0.86[JPT][hapmap]
rs7329488	1.00[YRI][hapmap]
rs7446	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7987502	0.85[CHB][hapmap]
rs7997798	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9526595	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9526607	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9535294	1.00[YRI][hapmap]
rs9535315	0.91[AFR][1000 genomes]
rs9535326	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9535333	0.81[AMR][1000 genomes]
rs9535339	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9535344	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535345	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535356	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535365	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50383200-50387200	Enhancers	Fetal Intestine Small	intestine
2	chr13:50383600-50389400	Enhancers	Fetal Heart	heart
3	chr13:50384200-50390200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:50384400-50387400	Enhancers	Fetal Intestine Large	intestine
5	chr13:50384600-50387200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:50384800-50389600	Weak transcription	Placenta	Placenta
7	chr13:50385000-50389400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:50385400-50387200	Weak transcription	Fetal Lung	lung
9	chr13:50385600-50387200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:50385600-50387800	Weak transcription	A549	lung
11	chr13:50385600-50388200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:50386000-50390400	Enhancers	HepG2	liver
13	chr13:50386200-50388200	Weak transcription	Left Ventricle	heart
14	chr13:50386600-50387200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr13:50386600-50387400	Enhancers	Psoas Muscle	Psoas
16	chr13:50386800-50387400	Enhancers	Skeletal Muscle Male	skeletal muscle

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