Variant report

Variant	rs1198325
Chromosome Location	chr13:50383685-50383686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50383263..50385911-chr13:50396889..50399144,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1009333	0.81[AFR][1000 genomes]
rs11148161	0.83[JPT][hapmap]
rs11148164	0.91[JPT][hapmap]
rs11148167	1.00[JPT][hapmap]
rs1198315	0.80[YRI][hapmap]
rs1198322	0.80[YRI][hapmap]
rs1198323	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1198327	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs1198329	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428108	0.91[JPT][hapmap]
rs12430539	1.00[ASN][1000 genomes]
rs12584401	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12866447	1.00[JPT][hapmap]
rs12868235	0.81[ASN][1000 genomes]
rs1570353	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs1923730	1.00[JPT][hapmap]
rs2146143	0.91[JPT][hapmap]
rs2236354	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs35672544	0.98[ASN][1000 genomes]
rs4603448	1.00[ASN][1000 genomes]
rs4643206	1.00[JPT][hapmap]
rs4941657	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4942864	1.00[JPT][hapmap]
rs4942869	0.95[ASN][1000 genomes]
rs4942870	1.00[ASN][1000 genomes]
rs4942871	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61961491	0.81[AFR][1000 genomes]
rs61961500	0.81[AFR][1000 genomes]
rs61961502	0.81[AFR][1000 genomes]
rs6561552	0.91[JPT][hapmap]
rs7446	0.91[JPT][hapmap]
rs7987502	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs7997798	1.00[JPT][hapmap]
rs9526592	1.00[JPT][hapmap]
rs9535301	0.91[JPT][hapmap]
rs9535326	1.00[JPT][hapmap]
rs9535332	0.92[JPT][hapmap]
rs9535333	1.00[JPT][hapmap]
rs9535344	0.98[ASN][1000 genomes]
rs9535345	0.98[ASN][1000 genomes]
rs9535347	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9535352	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9535356	0.84[ASN][1000 genomes]
rs9646001	0.91[JPT][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1198325	KPNA3	Cis_1M	lymphoblastoid	RTeQTL
rs1198325	EBPL	cis	Esophagus Muscularis	GTEx
rs1198325	EBPL	cis	Artery Tibial	GTEx
rs1198325	EBPL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50379600-50385200	Enhancers	HepG2	liver
2	chr13:50380600-50384600	Weak transcription	Pancreas	Pancrea
3	chr13:50381000-50384200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:50383200-50387200	Enhancers	Fetal Intestine Small	intestine
5	chr13:50383600-50389400	Enhancers	Fetal Heart	heart

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