Variant report

Variant	rs1198327
Chromosome Location	chr13:50387759-50387760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365277..50368611-chr13:50385585..50388603,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1009333	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10492591	0.88[EUR][1000 genomes]
rs1198315	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1198319	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1198320	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1198322	0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1198324	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1198325	0.81[AFR][1000 genomes]
rs1198328	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1198329	0.81[AFR][1000 genomes]
rs1201716	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1211304	0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1570353	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3851164	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3851166	0.96[EUR][1000 genomes]
rs4531635	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4942871	0.81[AFR][1000 genomes]
rs55732704	0.96[EUR][1000 genomes]
rs59641461	0.96[EUR][1000 genomes]
rs61961491	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61961500	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61961501	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61961502	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61961504	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961505	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961506	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961507	0.85[AMR][1000 genomes]
rs61961508	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961509	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61961510	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961511	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961512	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961513	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66752757	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194437	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194439	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194440	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194445	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996307	0.96[EUR][1000 genomes]
rs9316476	0.96[EUR][1000 genomes]
rs9535341	0.84[EUR][1000 genomes]
rs9562927	0.84[EUR][1000 genomes]
rs9596197	0.99[EUR][1000 genomes]
rs9596200	0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1198327	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50383600-50389400	Enhancers	Fetal Heart	heart
2	chr13:50384200-50390200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:50384800-50389600	Weak transcription	Placenta	Placenta
4	chr13:50385000-50389400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:50385600-50387800	Weak transcription	A549	lung
6	chr13:50385600-50388200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:50386000-50390400	Enhancers	HepG2	liver
8	chr13:50386200-50388200	Weak transcription	Left Ventricle	heart
9	chr13:50387200-50388200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:50387200-50388200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:50387200-50388200	Enhancers	Fetal Lung	lung
12	chr13:50387200-50388400	Enhancers	HSMMtube	muscle
13	chr13:50387400-50387800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
16	chr13:50387600-50388200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr13:50387600-50388800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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