Variant report

Variant	rs4531635
Chromosome Location	chr13:50403183-50403184
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50403150..50405801-chr13:50420228..50422990,2	MCF-7	breast:
2	chr13:50365843..50369914-chr13:50400944..50405026,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1198327	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1198328	0.83[EUR][1000 genomes]
rs3851164	0.84[EUR][1000 genomes]
rs3851166	0.82[EUR][1000 genomes]
rs55732704	0.82[EUR][1000 genomes]
rs59641461	0.82[EUR][1000 genomes]
rs61961500	0.85[EUR][1000 genomes]
rs61961501	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961502	0.85[EUR][1000 genomes]
rs61961504	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961505	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961507	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961508	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961513	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66752757	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194437	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194439	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194440	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194445	0.85[EUR][1000 genomes]
rs7996307	0.82[EUR][1000 genomes]
rs9316476	0.82[EUR][1000 genomes]
rs9596197	0.84[EUR][1000 genomes]
rs9596200	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4531635	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
3	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:50402200-50412800	Weak transcription	Fetal Intestine Small	intestine
6	chr13:50402400-50404600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr13:50402800-50403200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr13:50403000-50404400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr13:50403000-50410200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links