Variant report

Variant	rs61961501
Chromosome Location	chr13:50392956-50392957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1009333	0.88[EUR][1000 genomes]
rs10492591	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1198315	0.85[EUR][1000 genomes]
rs1198319	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1198320	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1198322	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1198324	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1198327	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1198328	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1201716	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1211304	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1570353	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2897770	0.80[AMR][1000 genomes]
rs3851164	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3851166	0.96[EUR][1000 genomes]
rs4531635	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4942866	0.81[AFR][1000 genomes]
rs55732704	0.96[EUR][1000 genomes]
rs59641461	0.96[EUR][1000 genomes]
rs61961500	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61961502	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61961504	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961505	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961506	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961507	0.80[AMR][1000 genomes]
rs61961508	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961509	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61961510	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961511	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961512	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961513	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66752757	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194437	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194439	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194440	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194445	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996307	0.96[EUR][1000 genomes]
rs9316476	0.96[EUR][1000 genomes]
rs9535341	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9562927	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9596197	0.99[EUR][1000 genomes]
rs9596200	0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61961501	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
3	chr13:50390000-50394800	Weak transcription	Placenta	Placenta
4	chr13:50390400-50394000	Weak transcription	HepG2	liver
5	chr13:50392800-50393200	Enhancers	Fetal Heart	heart

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