Variant report

Variant	rs3851164
Chromosome Location	chr13:50406427-50406428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1009333	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10492591	0.87[EUR][1000 genomes]
rs1198315	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1198319	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1198320	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1198322	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1198324	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1198327	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1198328	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1201716	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1211304	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1570353	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3851166	0.95[EUR][1000 genomes]
rs4531635	0.84[EUR][1000 genomes]
rs55732704	0.95[EUR][1000 genomes]
rs59641461	0.95[EUR][1000 genomes]
rs61961491	0.89[AFR][1000 genomes]
rs61961500	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61961501	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61961502	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61961504	0.84[EUR][1000 genomes]
rs61961505	0.84[EUR][1000 genomes]
rs61961506	0.84[EUR][1000 genomes]
rs61961507	0.80[AMR][1000 genomes]
rs61961508	0.84[EUR][1000 genomes]
rs61961509	0.83[EUR][1000 genomes]
rs61961510	0.84[EUR][1000 genomes]
rs61961511	0.84[EUR][1000 genomes]
rs61961512	0.84[EUR][1000 genomes]
rs61961513	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66752757	0.84[EUR][1000 genomes]
rs73194437	0.84[EUR][1000 genomes]
rs73194439	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73194440	0.84[EUR][1000 genomes]
rs73194445	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7996307	0.95[EUR][1000 genomes]
rs9316476	0.95[EUR][1000 genomes]
rs9535341	0.83[EUR][1000 genomes]
rs9562927	0.83[EUR][1000 genomes]
rs9596197	0.98[EUR][1000 genomes]
rs9596200	0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3851164	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
2	chr13:50402200-50412800	Weak transcription	Fetal Intestine Small	intestine
3	chr13:50403000-50410200	Weak transcription	HepG2	liver
4	chr13:50404000-50410600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:50405800-50414200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:50406000-50410400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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