Variant report

Variant	rs1198328
Chromosome Location	chr13:50389885-50389886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50389687..50391557-chr13:50395854..50397614,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1009333	0.85[EUR][1000 genomes]
rs10492591	0.85[EUR][1000 genomes]
rs1198315	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1198319	0.83[EUR][1000 genomes]
rs1198320	0.83[EUR][1000 genomes]
rs1198322	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1198324	0.85[EUR][1000 genomes]
rs1198327	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1201716	0.83[EUR][1000 genomes]
rs1211304	0.92[CEU][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1407440	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs1407441	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs1570353	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs3851164	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3851166	0.94[EUR][1000 genomes]
rs4531635	0.83[EUR][1000 genomes]
rs55732704	0.94[EUR][1000 genomes]
rs59641461	0.94[EUR][1000 genomes]
rs61961500	0.98[EUR][1000 genomes]
rs61961501	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61961502	0.98[EUR][1000 genomes]
rs61961504	0.83[EUR][1000 genomes]
rs61961505	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61961506	0.83[EUR][1000 genomes]
rs61961508	0.83[EUR][1000 genomes]
rs61961509	0.82[EUR][1000 genomes]
rs61961510	0.83[EUR][1000 genomes]
rs61961511	0.83[EUR][1000 genomes]
rs61961512	0.83[EUR][1000 genomes]
rs61961513	0.81[EUR][1000 genomes]
rs6561560	0.87[GIH][hapmap]
rs66752757	0.83[EUR][1000 genomes]
rs73194437	0.83[EUR][1000 genomes]
rs73194439	0.83[EUR][1000 genomes]
rs73194440	0.83[EUR][1000 genomes]
rs73194445	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7996307	0.94[EUR][1000 genomes]
rs9316474	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs9316476	0.94[EUR][1000 genomes]
rs9535310	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs9535341	0.92[CEU][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs9562927	0.92[CEU][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs9596197	0.96[EUR][1000 genomes]
rs9596200	0.94[EUR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1198328	RB1	cis	cerebellum	SCAN
rs1198328	RFP2	cis	multi-tissue	Pritchard
rs1198328	STK32C	trans	cerebellum	SCAN
rs1198328	SNORA31	cis	cerebellum	SCAN
rs1198328	HTR2A	cis	parietal	SCAN
rs1198328	TRIM13	Cis_1M	lymphoblastoid	RTeQTL
rs1198328	RCBTB1	cis	cerebellum	SCAN
rs1198328	EBPL	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50384200-50390200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:50386000-50390400	Enhancers	HepG2	liver
3	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
5	chr13:50388200-50390000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:50388800-50390000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:50388800-50390200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:50389400-50390200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:50389400-50392800	Weak transcription	Fetal Heart	heart
10	chr13:50389600-50390000	Enhancers	Placenta	Placenta

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