Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009333	0.84[EUR][1000 genomes]
rs10492591	0.84[EUR][1000 genomes]
rs1198315	0.82[EUR][1000 genomes]
rs1198319	0.82[EUR][1000 genomes]
rs1198320	0.82[EUR][1000 genomes]
rs1198322	0.84[EUR][1000 genomes]
rs1198324	0.84[EUR][1000 genomes]
rs1198327	0.96[EUR][1000 genomes]
rs1198328	0.94[EUR][1000 genomes]
rs1201716	0.82[EUR][1000 genomes]
rs1211304	0.84[EUR][1000 genomes]
rs1570353	0.84[EUR][1000 genomes]
rs3851164	0.95[EUR][1000 genomes]
rs3851166	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4531635	0.82[EUR][1000 genomes]
rs55732704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59641461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61961500	0.96[EUR][1000 genomes]
rs61961501	0.96[EUR][1000 genomes]
rs61961502	0.96[EUR][1000 genomes]
rs61961504	0.82[EUR][1000 genomes]
rs61961505	0.82[EUR][1000 genomes]
rs61961506	0.82[EUR][1000 genomes]
rs61961508	0.82[EUR][1000 genomes]
rs61961509	0.81[EUR][1000 genomes]
rs61961510	0.82[EUR][1000 genomes]
rs61961511	0.82[EUR][1000 genomes]
rs61961512	0.82[EUR][1000 genomes]
rs61961513	0.80[EUR][1000 genomes]
rs66752757	0.82[EUR][1000 genomes]
rs73194437	0.82[EUR][1000 genomes]
rs73194439	0.82[EUR][1000 genomes]
rs73194440	0.82[EUR][1000 genomes]
rs73194445	0.96[EUR][1000 genomes]
rs7996307	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316476	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9535341	0.81[EUR][1000 genomes]
rs9562927	0.81[EUR][1000 genomes]
rs9596197	0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9596200	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:50413400-50418600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:50415000-50418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:50415000-50418400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:50415000-50420600	Weak transcription	K562	blood
7	chr13:50415400-50421600	Weak transcription	HepG2	liver
8	chr13:50415400-50421800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:50415600-50421800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:50416200-50416400	Enhancers	Osteobl	bone
11	chr13:50416200-50416600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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