Variant report

Variant	rs61961506
Chromosome Location	chr13:50401701-50401702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365843..50369914-chr13:50400944..50405026,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1198327	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1198328	0.83[EUR][1000 genomes]
rs3851164	0.84[EUR][1000 genomes]
rs3851166	0.82[EUR][1000 genomes]
rs4531635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732704	0.82[EUR][1000 genomes]
rs59641461	0.82[EUR][1000 genomes]
rs61961500	0.85[EUR][1000 genomes]
rs61961501	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61961502	0.85[EUR][1000 genomes]
rs61961504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961505	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961507	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961513	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66752757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194437	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194439	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194445	0.85[EUR][1000 genomes]
rs7996307	0.82[EUR][1000 genomes]
rs9316476	0.82[EUR][1000 genomes]
rs9596197	0.84[EUR][1000 genomes]
rs9596200	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61961506	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
3	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:50401000-50403000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:50401400-50403000	Enhancers	HepG2	liver
7	chr13:50401600-50402000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr13:50401600-50402200	Enhancers	Fetal Intestine Large	intestine
9	chr13:50401600-50402200	Enhancers	Fetal Intestine Small	intestine
10	chr13:50401600-50402400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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