Variant report

Variant	rs59641461
Chromosome Location	chr13:50414634-50414635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50411069..50412903-chr13:50413412..50414955,2	K562	blood:
2	chr13:50409551..50411407-chr13:50413409..50415951,2	MCF-7	breast:
3	chr13:50413564..50415064-chr7:6098251..6100141,2	K562	blood:
4	chr13:50411667..50415006-chr13:50418421..50422258,4	K562	blood:

Variant related genes	Relation type
ENSG00000086232	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009333	0.84[EUR][1000 genomes]
rs10492591	0.84[EUR][1000 genomes]
rs1198315	0.82[EUR][1000 genomes]
rs1198319	0.82[EUR][1000 genomes]
rs1198320	0.82[EUR][1000 genomes]
rs1198322	0.84[EUR][1000 genomes]
rs1198324	0.84[EUR][1000 genomes]
rs1198327	0.96[EUR][1000 genomes]
rs1198328	0.94[EUR][1000 genomes]
rs1201716	0.82[EUR][1000 genomes]
rs1211304	0.84[EUR][1000 genomes]
rs1570353	0.84[EUR][1000 genomes]
rs3851164	0.95[EUR][1000 genomes]
rs3851166	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4531635	0.82[EUR][1000 genomes]
rs55732704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61961500	0.96[EUR][1000 genomes]
rs61961501	0.96[EUR][1000 genomes]
rs61961502	0.96[EUR][1000 genomes]
rs61961504	0.82[EUR][1000 genomes]
rs61961505	0.82[EUR][1000 genomes]
rs61961506	0.82[EUR][1000 genomes]
rs61961508	0.82[EUR][1000 genomes]
rs61961509	0.81[EUR][1000 genomes]
rs61961510	0.82[EUR][1000 genomes]
rs61961511	0.82[EUR][1000 genomes]
rs61961512	0.82[EUR][1000 genomes]
rs61961513	0.80[EUR][1000 genomes]
rs66752757	0.82[EUR][1000 genomes]
rs73194437	0.82[EUR][1000 genomes]
rs73194439	0.82[EUR][1000 genomes]
rs73194440	0.82[EUR][1000 genomes]
rs73194445	0.96[EUR][1000 genomes]
rs7996307	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316476	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9535341	0.81[EUR][1000 genomes]
rs9562927	0.81[EUR][1000 genomes]
rs9596197	0.98[EUR][1000 genomes]
rs9596200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59641461	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50410600-50415000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:50412200-50415200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:50412600-50415400	Enhancers	HepG2	liver
5	chr13:50412800-50415000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr13:50413000-50415200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:50413200-50416000	Weak transcription	Osteobl	bone
9	chr13:50413400-50414800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:50413400-50418600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:50413600-50414800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr13:50414200-50415000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr13:50414200-50415000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:50414200-50415000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:50414200-50415200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:50414200-50415200	Enhancers	Primary hematopoietic stem cells	blood
17	chr13:50414200-50415400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr13:50414400-50414800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr13:50414400-50414800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:50414400-50415000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr13:50414400-50415000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr13:50414400-50415000	Enhancers	Fetal Thymus	thymus
23	chr13:50414400-50415000	Enhancers	K562	blood
24	chr13:50414400-50415200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr13:50414400-50415200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr13:50414400-50415600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr13:50414600-50415000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr13:50414600-50415000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr13:50414600-50415000	Enhancers	Fetal Intestine Small	intestine
30	chr13:50414600-50415400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr13:50414600-50415600	Enhancers	Fetal Intestine Large	intestine

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