Variant report

Variant	rs1198324
Chromosome Location	chr13:50380717-50380718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365533..50367919-chr13:50378840..50381173,2	K562	blood:
2	chr13:50379870..50382030-chr13:50384102..50385752,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009333	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10492591	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1198315	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1198319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1198320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1198322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1198327	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1198328	0.85[EUR][1000 genomes]
rs1201716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1211304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1547623	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1570353	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1581745	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2181185	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2897770	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3851162	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3851164	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3851166	0.84[EUR][1000 genomes]
rs4942863	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4942866	0.91[EUR][1000 genomes]
rs55732704	0.84[EUR][1000 genomes]
rs59641461	0.84[EUR][1000 genomes]
rs61961491	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61961500	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61961501	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61961502	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73194445	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7330392	0.86[AMR][1000 genomes]
rs7983303	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7984061	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7996307	0.84[EUR][1000 genomes]
rs9316474	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9316476	0.84[EUR][1000 genomes]
rs9535316	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535340	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535341	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9562927	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9596197	0.87[EUR][1000 genomes]
rs9596200	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv900074	chr13:50317104-50381016	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1198324	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50379600-50385200	Enhancers	HepG2	liver
2	chr13:50379800-50381000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:50380000-50381200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:50380600-50384600	Weak transcription	Pancreas	Pancrea

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