Variant report

Variant	rs1009333
Chromosome Location	chr13:50383341-50383342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50383263..50385911-chr13:50396889..50399144,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10492591	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1198315	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1198319	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1198320	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1198322	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1198324	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1198325	0.81[AFR][1000 genomes]
rs1198327	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1198328	0.85[EUR][1000 genomes]
rs1198329	0.81[AFR][1000 genomes]
rs1201716	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1211304	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1547623	0.80[EUR][1000 genomes]
rs1570353	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1581745	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2181185	0.80[EUR][1000 genomes]
rs2897770	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3851162	0.82[EUR][1000 genomes]
rs3851164	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3851166	0.84[EUR][1000 genomes]
rs4942863	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4942866	0.91[EUR][1000 genomes]
rs4942871	0.81[AFR][1000 genomes]
rs55732704	0.84[EUR][1000 genomes]
rs59641461	0.84[EUR][1000 genomes]
rs61961491	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61961500	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61961501	0.88[EUR][1000 genomes]
rs61961502	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73194445	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7983303	0.80[EUR][1000 genomes]
rs7984061	0.81[EUR][1000 genomes]
rs7996307	0.84[EUR][1000 genomes]
rs9316474	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9316476	0.84[EUR][1000 genomes]
rs9535316	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535340	0.82[EUR][1000 genomes]
rs9535341	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9562927	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9596197	0.87[EUR][1000 genomes]
rs9596200	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1009333	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50379600-50385200	Enhancers	HepG2	liver
2	chr13:50380600-50384600	Weak transcription	Pancreas	Pancrea
3	chr13:50381000-50384200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:50383200-50387200	Enhancers	Fetal Intestine Small	intestine

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