Variant report

Variant	rs61961507
Chromosome Location	chr13:50401831-50401832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1198327	0.85[AMR][1000 genomes]
rs3851164	0.80[AMR][1000 genomes]
rs4531635	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961500	0.80[AMR][1000 genomes]
rs61961501	0.80[AMR][1000 genomes]
rs61961504	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961505	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961506	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961508	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961509	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961510	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961511	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961512	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961513	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66752757	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194437	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194439	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194440	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194445	0.83[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61961507	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
3	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:50401000-50403000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:50401400-50403000	Enhancers	HepG2	liver
7	chr13:50401600-50402000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr13:50401600-50402200	Enhancers	Fetal Intestine Large	intestine
9	chr13:50401600-50402200	Enhancers	Fetal Intestine Small	intestine
10	chr13:50401600-50402400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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