Variant report

Variant	rs9535356
Chromosome Location	chr13:50392488-50392489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11148167	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1198323	0.84[ASN][1000 genomes]
rs1198325	0.84[ASN][1000 genomes]
rs1198329	0.97[ASN][1000 genomes]
rs12430539	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12584401	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12853861	0.88[EUR][1000 genomes]
rs12864534	0.91[AFR][1000 genomes]
rs12866447	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12868235	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12874106	0.85[EUR][1000 genomes]
rs12877931	0.91[AFR][1000 genomes]
rs1535543	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1575387	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1923730	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2236354	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35672544	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3742095	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4603448	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4643206	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4941657	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4942864	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4942870	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4942871	0.86[ASN][1000 genomes]
rs4942879	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7446	0.91[AFR][1000 genomes]
rs7997798	0.91[AFR][1000 genomes]
rs9526595	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9526607	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535315	0.91[AFR][1000 genomes]
rs9535326	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9535339	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9535344	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9535345	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9535347	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535352	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535365	0.89[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9535356	KPNA3	Cis_1M	lymphoblastoid	RTeQTL
rs9535356	EBPL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
3	chr13:50389400-50392800	Weak transcription	Fetal Heart	heart
4	chr13:50390000-50394800	Weak transcription	Placenta	Placenta
5	chr13:50390400-50394000	Weak transcription	HepG2	liver

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