Variant report

Variant	rs9526607
Chromosome Location	chr13:50418893-50418894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12430539	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12584401	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12853861	0.93[EUR][1000 genomes]
rs12868235	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12874106	0.87[EUR][1000 genomes]
rs2236354	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35672544	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4603448	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4941657	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4942870	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4942879	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535344	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9535345	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9535347	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9535352	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9535356	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535365	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9526607	EBPL	Cis_1M	lymphoblastoid	RTeQTL
rs9526607	KPNA3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:50415000-50420600	Weak transcription	K562	blood
4	chr13:50415400-50421600	Weak transcription	HepG2	liver
5	chr13:50415400-50421800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:50415600-50421800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:50417600-50421800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:50418800-50421800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:50418800-50421800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:50418800-50421800	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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