Variant report

Variant	rs35672544
Chromosome Location	chr13:50378306-50378307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11148167	0.88[AMR][1000 genomes]
rs1198323	0.98[ASN][1000 genomes]
rs1198325	0.98[ASN][1000 genomes]
rs1198329	0.85[ASN][1000 genomes]
rs12430539	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12584401	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12853861	0.89[EUR][1000 genomes]
rs12866447	0.84[AMR][1000 genomes]
rs12868235	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12874106	0.89[EUR][1000 genomes]
rs1535543	0.88[AMR][1000 genomes]
rs1575387	0.85[AMR][1000 genomes]
rs1923730	0.85[AMR][1000 genomes]
rs2236354	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3742095	0.86[AMR][1000 genomes]
rs4603448	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4643206	0.88[AMR][1000 genomes]
rs4941657	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4942864	0.85[AMR][1000 genomes]
rs4942869	0.93[ASN][1000 genomes]
rs4942870	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942871	0.96[ASN][1000 genomes]
rs4942879	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9526595	0.85[AMR][1000 genomes]
rs9526607	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9535326	0.85[AMR][1000 genomes]
rs9535333	0.81[AMR][1000 genomes]
rs9535339	0.86[AMR][1000 genomes]
rs9535344	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535345	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535347	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535352	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535356	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9535365	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv900074	chr13:50317104-50381016	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35672544	KPNA3	Cis_1M	lymphoblastoid	RTeQTL
rs35672544	EBPL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50368400-50378600	Weak transcription	HepG2	liver

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