Variant report

Variant	rs4942879
Chromosome Location	chr13:50416939-50416940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11148167	0.85[MEX][hapmap];0.81[TSI][hapmap]
rs12430539	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12584401	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12853861	0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs12866447	0.80[TSI][hapmap]
rs12868235	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12874106	0.87[EUR][1000 genomes]
rs1575387	0.81[AMR][1000 genomes]
rs1923730	0.85[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes]
rs2236354	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35672544	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4603448	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4941657	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4942864	0.90[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs4942870	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs716370	0.86[JPT][hapmap]
rs7446	0.81[TSI][hapmap]
rs7987502	0.81[MEX][hapmap]
rs7997798	0.85[MEX][hapmap]
rs9526595	0.81[AMR][1000 genomes]
rs9526607	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535326	0.85[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs9535344	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9535345	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9535347	0.95[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9535352	0.95[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9535356	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535365	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4942879	KPNA3	Cis_1M	lymphoblastoid	RTeQTL
rs4942879	CAB39L	cis	cerebellum	SCAN
rs4942879	DLEU1	cis	parietal	SCAN
rs4942879	EBPL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:50413400-50418600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:50415000-50418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:50415000-50418400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:50415000-50420600	Weak transcription	K562	blood
7	chr13:50415400-50421600	Weak transcription	HepG2	liver
8	chr13:50415400-50421800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:50415600-50421800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:50416600-50418200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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