Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:50365656..50368255-chr13:50394184..50396583,2	K562	blood:
2	chr13:50365656..50370137-chr13:50393100..50397316,5	K562	blood:
3	chr13:50393684..50395884-chr13:50422220..50424926,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1061979	1.00[CHD][hapmap]
rs11148167	0.80[MKK][hapmap]
rs12430539	0.93[EUR][1000 genomes]
rs12584401	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs12868235	0.87[EUR][1000 genomes]
rs12874106	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12875005	0.92[AFR][1000 genomes]
rs12876223	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12876889	0.92[AFR][1000 genomes]
rs1923730	0.80[MKK][hapmap];0.80[TSI][hapmap]
rs2236354	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs34423763	0.92[AFR][1000 genomes]
rs35672544	0.89[EUR][1000 genomes]
rs4603448	0.93[EUR][1000 genomes]
rs4941657	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs4942864	0.80[MKK][hapmap]
rs4942870	0.93[EUR][1000 genomes]
rs4942879	0.93[EUR][1000 genomes]
rs71428292	0.92[AFR][1000 genomes]
rs7329488	1.00[CHD][hapmap]
rs7446	0.80[MKK][hapmap]
rs7997798	0.93[MKK][hapmap]
rs9526607	0.93[EUR][1000 genomes]
rs9535294	1.00[CHD][hapmap]
rs9535326	0.80[MKK][hapmap]
rs9535344	0.89[EUR][1000 genomes]
rs9535345	0.89[EUR][1000 genomes]
rs9535347	0.83[CEU][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs9535352	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs9535356	0.88[EUR][1000 genomes]
rs9535365	0.92[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12853861	EBPL	cis	multi-tissue	Pritchard
rs12853861	DLEU1	cis	parietal	SCAN
rs12853861	CAB39L	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
2	chr13:50390000-50394800	Weak transcription	Placenta	Placenta
3	chr13:50393200-50394800	Weak transcription	Fetal Heart	heart
4	chr13:50394000-50396000	Enhancers	HepG2	liver
5	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:50394400-50395800	Enhancers	Fetal Intestine Small	intestine
7	chr13:50394600-50394800	Enhancers	H9 Cell Line	embryonic stem cell

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