Variant report

Variant	rs9535365
Chromosome Location	chr13:50416264-50416265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12430539	0.94[EUR][1000 genomes]
rs12584401	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs12853861	0.92[EUR][1000 genomes]
rs12868235	0.88[EUR][1000 genomes]
rs12874106	0.86[EUR][1000 genomes]
rs2236354	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs35672544	0.91[EUR][1000 genomes]
rs4603448	0.94[EUR][1000 genomes]
rs4941657	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4942870	0.94[EUR][1000 genomes]
rs4942879	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716370	0.86[JPT][hapmap]
rs9526607	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535344	0.91[EUR][1000 genomes]
rs9535345	0.91[EUR][1000 genomes]
rs9535347	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs9535352	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9535356	0.89[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9535365	EBPL	Cis_1M	lymphoblastoid	RTeQTL
rs9535365	KPNA3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:50413400-50418600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:50415000-50418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:50415000-50418400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:50415000-50420600	Weak transcription	K562	blood
7	chr13:50415400-50421600	Weak transcription	HepG2	liver
8	chr13:50415400-50421800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:50415600-50421800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:50416200-50416400	Enhancers	Osteobl	bone
11	chr13:50416200-50416600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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