Variant report

Variant	rs800310
Chromosome Location	chr10:44815048-44815049
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11238983	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs12265086	0.83[ASN][1000 genomes]
rs12265306	0.83[ASN][1000 genomes]
rs17156166	1.00[JPT][hapmap]
rs2505735	0.81[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505740	0.83[TSI][hapmap]
rs4491167	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs61856381	0.83[ASN][1000 genomes]
rs7913265	0.83[ASN][1000 genomes]
rs7914042	0.83[ASN][1000 genomes]
rs800331	0.83[ASN][1000 genomes]
rs977754	0.83[MEX][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44806600-44820800	Weak transcription	Right Atrium	heart
2	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
3	chr10:44807600-44820800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44808000-44820000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44812800-44817200	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links