Variant report

Variant	rs800331
Chromosome Location	chr10:44806378-44806379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44668773..44669337-chr10:44805974..44806908,2	MCF-7	breast:
2	chr10:44804868..44806553-chr10:44814577..44816220,2	MCF-7	breast:
3	chr10:44795472..44799365-chr10:44803832..44806502,4	MCF-7	breast:
4	chr10:44796365..44797945-chr10:44804933..44807344,2	MCF-7	breast:
5	chr10:44804505..44808299-chr10:44810084..44813443,4	MCF-7	breast:
6	chr10:44805001..44807062-chr10:44879754..44882098,2	MCF-7	breast:
7	chr10:44799839..44801951-chr10:44804606..44806678,2	MCF-7	breast:
8	chr10:44729477..44732943-chr10:44804375..44806757,3	MCF-7	breast:
9	chr10:44802341..44804766-chr10:44804876..44806758,5	MCF-7	breast:
10	chr10:44803835..44808039-chr10:44810425..44813828,4	K562	blood:
11	chr10:44166819..44167763-chr10:44806148..44807076,3	K562	blood:
12	chr10:44796684..44797219-chr10:44806257..44806909,2	K562	blood:
13	chr10:44804168..44805892-chr10:44806040..44808207,2	MCF-7	breast:
14	chr10:44166763..44167802-chr10:44806081..44806918,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11238983	1.00[ASN][1000 genomes]
rs12265086	1.00[ASN][1000 genomes]
rs12265306	1.00[ASN][1000 genomes]
rs2505735	0.86[ASN][1000 genomes]
rs4491167	1.00[ASN][1000 genomes]
rs61856381	1.00[ASN][1000 genomes]
rs7913265	1.00[ASN][1000 genomes]
rs7914042	1.00[ASN][1000 genomes]
rs800310	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44802200-44806400	Weak transcription	HSMM	muscle
2	chr10:44802400-44806400	Weak transcription	NHLF	lung
3	chr10:44802400-44806600	Weak transcription	NH-A	brain
4	chr10:44802600-44806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44802600-44806400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:44804600-44807000	Enhancers	Fetal Brain Male	brain
7	chr10:44805600-44807200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:44805800-44806400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:44805800-44806400	Enhancers	Fetal Lung	lung
10	chr10:44805800-44806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:44805800-44807000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:44806000-44806400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:44806000-44806600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
14	chr10:44806000-44806800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:44806000-44807000	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:44806000-44807000	Flanking Active TSS	GM12878-XiMat	blood
17	chr10:44806000-44807200	Enhancers	Placenta	Placenta
18	chr10:44806000-44807400	Enhancers	Fetal Heart	heart
19	chr10:44806200-44806400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr10:44806200-44806400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
21	chr10:44806200-44806400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:44806200-44806400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:44806200-44806400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr10:44806200-44806400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
25	chr10:44806200-44806400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr10:44806200-44806400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:44806200-44806400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:44806200-44806400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:44806200-44806400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:44806200-44806400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:44806200-44806400	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr10:44806200-44806400	Enhancers	Liver	Liver
33	chr10:44806200-44806400	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr10:44806200-44806400	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr10:44806200-44806400	Active TSS	Duodenum Mucosa	Duodenum
36	chr10:44806200-44806400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
37	chr10:44806200-44806400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
38	chr10:44806200-44806400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
39	chr10:44806200-44806400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
40	chr10:44806200-44806400	Flanking Active TSS	Ovary	ovary
41	chr10:44806200-44806400	Active TSS	Psoas Muscle	Psoas
42	chr10:44806200-44806400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
43	chr10:44806200-44806400	Active TSS	Osteobl	bone
44	chr10:44806200-44806600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:44806200-44806600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:44806200-44806600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:44806200-44806600	Flanking Active TSS	Colonic Mucosa	Colon
48	chr10:44806200-44806600	Active TSS	Fetal Brain Female	brain
49	chr10:44806200-44806600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr10:44806200-44806600	Flanking Active TSS	Fetal Muscle Leg	muscle

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