Variant report

Variant	rs8006035
Chromosome Location	chr14:32667810-32667811
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr14:32667028-32667854	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-7	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10130218	0.90[ASN][1000 genomes]
rs10136523	0.95[ASN][1000 genomes]
rs10137315	0.93[ASN][1000 genomes]
rs10138295	0.92[ASN][1000 genomes]
rs10138397	0.92[ASN][1000 genomes]
rs10139123	0.94[ASN][1000 genomes]
rs10140813	0.91[ASN][1000 genomes]
rs10141044	0.90[ASN][1000 genomes]
rs10141207	0.90[ASN][1000 genomes]
rs10144755	0.92[ASN][1000 genomes]
rs10872859	0.92[ASN][1000 genomes]
rs11845870	0.94[ASN][1000 genomes]
rs11848180	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12878800	0.95[ASN][1000 genomes]
rs17098553	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17098598	0.90[ASN][1000 genomes]
rs1958367	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1958368	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2149665	0.94[ASN][1000 genomes]
rs5002692	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7152132	0.89[EUR][1000 genomes]
rs7160720	0.94[ASN][1000 genomes]
rs7160938	0.94[ASN][1000 genomes]
rs8003494	0.95[ASN][1000 genomes]
rs8003504	0.94[ASN][1000 genomes]
rs8005822	0.94[ASN][1000 genomes]
rs8005842	0.94[ASN][1000 genomes]
rs8006774	0.94[ASN][1000 genomes]
rs8011428	0.92[ASN][1000 genomes]
rs8013618	0.92[ASN][1000 genomes]
rs8013984	0.92[ASN][1000 genomes]
rs8016252	0.90[ASN][1000 genomes]
rs8017486	0.94[ASN][1000 genomes]
rs8017665	0.90[ASN][1000 genomes]
rs8018778	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020915	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8020976	0.94[ASN][1000 genomes]
rs8022007	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32660200-32669000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:32666800-32668000	Enhancers	GM12878-XiMat	blood
3	chr14:32667600-32670000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:32667600-32670000	Weak transcription	NHEK	skin

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