Variant report

Variant	rs8020976
Chromosome Location	chr14:32675702-32675703
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr14:32675061-32675743	HCT-116	colon:	n/a	chr14:32675403-32675410 chr14:32675402-32675411 chr14:32675402-32675410 chr14:32675401-32675410
2	EP300	chr14:32675076-32675743	GM12878	blood:	n/a	chr14:32675319-32675328 chr14:32675143-32675157 chr14:32675402-32675411 chr14:32675401-32675410 chr14:32675375-32675389
3	WRNIP1	chr14:32674959-32676002	GM12878	blood:	n/a	n/a
4	JUND	chr14:32675072-32676567	GM12878	blood:	n/a	chr14:32675403-32675410 chr14:32675402-32675411 chr14:32675402-32675410 chr14:32675400-32675411 chr14:32675401-32675410
5	ZEB1	chr14:32675225-32675832	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32674899..32676937-chr14:32680136..32682555,2	K562	blood:
2	chr14:32672713..32675385-chr14:32675596..32677310,2	MCF-7	breast:

Variant related genes	Relation type
RNU6-8	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10130218	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10136523	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10137315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10138295	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10138397	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10139123	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140813	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10141044	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141207	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10144755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11845870	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848180	0.91[ASN][1000 genomes]
rs12878800	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17098553	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17098598	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1958367	0.96[ASN][1000 genomes]
rs1958368	0.87[ASN][1000 genomes]
rs2149665	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5002692	0.86[ASN][1000 genomes]
rs7160720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003494	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003504	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8005822	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005842	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006035	0.94[ASN][1000 genomes]
rs8006774	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011428	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8013618	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8013984	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8016252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8017486	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017665	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018778	0.92[ASN][1000 genomes]
rs8020915	0.96[ASN][1000 genomes]
rs8022007	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32673600-32677400	Weak transcription	Small Intestine	intestine
2	chr14:32673600-32688200	Weak transcription	Left Ventricle	heart
3	chr14:32673600-32692800	Weak transcription	Psoas Muscle	Psoas
4	chr14:32673800-32679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:32673800-32682000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:32673800-32682000	Weak transcription	NHEK	skin
7	chr14:32674200-32679400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:32674800-32675800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:32674800-32675800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:32674800-32676000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:32675000-32675800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:32675000-32675800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:32675000-32675800	Enhancers	Duodenum Mucosa	Duodenum
14	chr14:32675000-32675800	Bivalent Enhancer	HepG2	liver
15	chr14:32675000-32676000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:32675000-32676000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:32675200-32675800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr14:32675200-32675800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:32675200-32675800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:32675200-32676000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:32675200-32677200	Enhancers	Fetal Intestine Small	intestine
22	chr14:32675400-32675800	Enhancers	Fetal Thymus	thymus
23	chr14:32675400-32676000	Enhancers	Primary B cells from peripheral blood	blood
24	chr14:32675400-32676200	Enhancers	Fetal Heart	heart
25	chr14:32675400-32677200	Enhancers	Fetal Intestine Large	intestine
26	chr14:32675600-32675800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:32675600-32675800	Enhancers	Brain Substantia Nigra	brain
28	chr14:32675600-32676000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:32675600-32676000	Flanking Active TSS	GM12878-XiMat	blood

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