Variant report

Variant	rs8010212
Chromosome Location	chr14:78337736-78337737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78337502..78339743-chr14:78343006..78345353,2	K562	blood:
2	chr14:78336910..78339002-chr14:78342253..78344506,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10130790	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141465	0.91[ASN][1000 genomes]
rs10146144	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1107991	0.92[ASN][1000 genomes]
rs11159290	0.86[ASN][1000 genomes]
rs11159306	0.90[ASN][1000 genomes]
rs11628049	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12893815	0.90[ASN][1000 genomes]
rs2017927	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2052444	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2080814	0.90[ASN][1000 genomes]
rs2098583	0.92[ASN][1000 genomes]
rs2112129	0.86[ASN][1000 genomes]
rs2364739	0.89[ASN][1000 genomes]
rs2364741	0.90[ASN][1000 genomes]
rs2364744	0.89[ASN][1000 genomes]
rs2364745	0.94[ASN][1000 genomes]
rs2364841	0.85[EUR][1000 genomes]
rs2886167	0.90[ASN][1000 genomes]
rs2886168	0.92[ASN][1000 genomes]
rs3783971	0.94[ASN][1000 genomes]
rs3783974	0.92[ASN][1000 genomes]
rs3825691	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825692	0.89[ASN][1000 genomes]
rs4371094	0.91[ASN][1000 genomes]
rs4448861	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4519274	0.86[EUR][1000 genomes]
rs4899679	0.87[ASN][1000 genomes]
rs4903655	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903660	0.92[ASN][1000 genomes]
rs4903661	0.92[ASN][1000 genomes]
rs4903662	0.92[ASN][1000 genomes]
rs4903664	0.88[ASN][1000 genomes]
rs6574406	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574408	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574409	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7145309	0.90[ASN][1000 genomes]
rs7146020	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs724263	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs741575	0.90[ASN][1000 genomes]
rs8004053	0.90[ASN][1000 genomes]
rs8006218	0.92[ASN][1000 genomes]
rs8009937	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8018674	0.87[ASN][1000 genomes]
rs8019539	0.92[ASN][1000 genomes]
rs8022985	0.90[ASN][1000 genomes]
rs874025	0.90[ASN][1000 genomes]
rs962539	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:78301400-78342200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
4	chr14:78310000-78339400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:78310400-78345000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:78314200-78348400	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:78320800-78342200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:78321400-78342800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:78321800-78348400	Weak transcription	Placenta	Placenta
10	chr14:78322000-78342000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:78322000-78342600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:78322200-78353400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:78323400-78339600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr14:78324000-78353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:78324200-78354800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:78324400-78339800	Weak transcription	Ovary	ovary
17	chr14:78325000-78345000	Weak transcription	Brain Angular Gyrus	brain
18	chr14:78326400-78339800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:78326400-78342000	Weak transcription	Adipose Nuclei	Adipose
20	chr14:78326600-78352800	Weak transcription	Esophagus	oesophagus
21	chr14:78327000-78338000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:78327000-78339400	Weak transcription	Fetal Muscle Leg	muscle
23	chr14:78327000-78342000	Weak transcription	Lung	lung
24	chr14:78327200-78348600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr14:78327800-78400600	Weak transcription	Colonic Mucosa	Colon
26	chr14:78328000-78338200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:78328000-78353400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:78329000-78345000	Weak transcription	Brain Substantia Nigra	brain
29	chr14:78329000-78345800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:78329000-78347600	Weak transcription	Brain Anterior Caudate	brain
31	chr14:78329000-78348400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:78329200-78345400	Weak transcription	Right Ventricle	heart
33	chr14:78329400-78345200	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:78332200-78338000	Weak transcription	Fetal Intestine Small	intestine
35	chr14:78332200-78338600	Weak transcription	Pancreas	Pancrea
36	chr14:78332200-78339600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:78332200-78340200	Weak transcription	Primary B cells from cord blood	blood
38	chr14:78333200-78339800	Weak transcription	Spleen	Spleen
39	chr14:78333400-78348600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr14:78333600-78339600	Weak transcription	Gastric	stomach
41	chr14:78334400-78338000	Weak transcription	Primary T cells from cord blood	blood
42	chr14:78334600-78353400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr14:78335600-78339600	Weak transcription	Dnd41	blood
44	chr14:78335800-78339400	Weak transcription	Brain Germinal Matrix	brain
45	chr14:78335800-78348400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:78335800-78358600	Weak transcription	HSMMtube	muscle
47	chr14:78336000-78341800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:78336200-78337800	Enhancers	K562	blood
49	chr14:78336400-78354200	Weak transcription	Fetal Intestine Large	intestine
50	chr14:78337200-78345400	Weak transcription	Left Ventricle	heart

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