Variant report

Variant	rs2886168
Chromosome Location	chr14:78316132-78316133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10130790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10141465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10146144	0.97[ASN][1000 genomes]
rs1107991	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11159290	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11159291	0.87[CHB][hapmap]
rs11159294	0.83[CHB][hapmap]
rs11159298	0.87[CHB][hapmap]
rs11159300	0.87[CHB][hapmap]
rs11159301	0.87[CHB][hapmap]
rs11159302	0.86[CHB][hapmap]
rs11159306	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11622297	0.82[CHB][hapmap]
rs11628049	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12587361	0.87[CHB][hapmap]
rs12878904	0.87[CHB][hapmap]
rs12879726	0.83[CHB][hapmap]
rs12884153	0.83[CHB][hapmap]
rs12893815	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2003600	0.87[CHB][hapmap]
rs2010591	0.82[CHB][hapmap]
rs2017927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2052444	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs2080814	0.89[ASN][1000 genomes]
rs2080815	0.87[CHB][hapmap]
rs2080816	0.87[CHB][hapmap]
rs2080817	0.87[CHB][hapmap]
rs2098583	0.86[ASN][1000 genomes]
rs2098584	0.90[CHB][hapmap]
rs2112129	0.84[ASN][1000 genomes]
rs2287648	0.87[CHB][hapmap]
rs2364739	0.88[ASN][1000 genomes]
rs2364741	0.89[ASN][1000 genomes]
rs2364743	0.87[CHB][hapmap]
rs2364744	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2364745	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2364842	0.83[CHB][hapmap]
rs2886167	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs3783962	0.87[CHB][hapmap]
rs3783966	0.87[CHB][hapmap]
rs3783968	0.87[CHB][hapmap]
rs3783969	0.82[CHB][hapmap]
rs3783971	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3783974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3825692	0.88[ASN][1000 genomes]
rs4359362	0.83[CHB][hapmap]
rs4371094	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4393507	0.83[CHB][hapmap]
rs4448861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4519274	0.82[ASN][1000 genomes]
rs4899677	0.83[CHB][hapmap]
rs4899678	0.87[CHB][hapmap]
rs4899679	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4903654	0.83[CHB][hapmap]
rs4903655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4903656	0.87[CHB][hapmap]
rs4903658	0.87[CHB][hapmap]
rs4903660	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4903661	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4903662	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4903663	0.87[CHB][hapmap]
rs4903664	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6574406	0.99[ASN][1000 genomes]
rs6574408	0.97[ASN][1000 genomes]
rs6574409	0.93[ASN][1000 genomes]
rs7145309	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7146020	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs7149884	0.87[CHB][hapmap]
rs7149911	0.87[CHB][hapmap]
rs7151404	0.87[CHB][hapmap]
rs719049	0.83[CHB][hapmap]
rs724263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs726538	0.83[CHB][hapmap]
rs741573	0.87[CHB][hapmap]
rs741574	0.87[CHB][hapmap]
rs741575	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7493386	0.85[CHB][hapmap]
rs8004053	0.84[ASN][1000 genomes]
rs8006218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009433	0.87[CHB][hapmap]
rs8009937	0.90[ASN][1000 genomes]
rs8010212	0.92[ASN][1000 genomes]
rs8014296	0.87[CHB][hapmap]
rs8018674	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs8019539	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs8022985	0.84[ASN][1000 genomes]
rs874025	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs877561	0.86[CHB][hapmap]
rs962539	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78293400-78331800	Weak transcription	Pancreas	Pancrea
3	chr14:78297600-78324000	Weak transcription	Ovary	ovary
4	chr14:78297600-78336600	Weak transcription	Left Ventricle	heart
5	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:78299000-78325200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:78300000-78325400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:78301200-78325200	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:78301400-78325200	Weak transcription	Gastric	stomach
10	chr14:78301400-78325400	Weak transcription	Lung	lung
11	chr14:78301400-78342200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:78302200-78323200	Weak transcription	Right Ventricle	heart
13	chr14:78302200-78331000	Weak transcription	Liver	Liver
14	chr14:78303000-78321200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:78306000-78326400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:78306000-78328800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:78306000-78331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
19	chr14:78306600-78330400	Weak transcription	Dnd41	blood
20	chr14:78310000-78325200	Weak transcription	Brain Substantia Nigra	brain
21	chr14:78310000-78339400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:78310400-78345000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:78311600-78325000	Weak transcription	Primary T cells from cord blood	blood
24	chr14:78311800-78316600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:78313400-78326000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:78314200-78348400	Weak transcription	Colon Smooth Muscle	Colon
27	chr14:78315800-78326400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links