Variant report

Variant	rs2010591
Chromosome Location	chr14:78367380-78367381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10130790	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10146144	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1107991	0.82[CHB][hapmap]
rs11159290	0.82[CHB][hapmap]
rs11159306	0.83[CHB][hapmap]
rs11623306	0.87[ASN][1000 genomes]
rs11628049	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12893815	0.83[CHB][hapmap]
rs2017927	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2052444	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2287650	0.83[CHB][hapmap]
rs2364841	0.85[EUR][1000 genomes]
rs2886167	0.82[CHB][hapmap]
rs2886168	0.82[CHB][hapmap]
rs3783960	0.87[ASN][1000 genomes]
rs3783974	0.83[CHB][hapmap]
rs3825691	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4371094	0.83[CHB][hapmap]
rs4448861	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4519274	0.86[EUR][1000 genomes]
rs4903655	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4903660	0.83[CHB][hapmap]
rs4903661	0.82[CHB][hapmap]
rs4903662	0.83[CHB][hapmap]
rs4903664	0.83[CHB][hapmap]
rs4903666	0.80[CHB][hapmap]
rs6574406	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6574408	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6574409	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6574410	0.87[ASN][1000 genomes]
rs7145309	0.82[CHB][hapmap]
rs7145567	0.83[CHB][hapmap]
rs7146020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7147735	0.83[CHB][hapmap]
rs7149911	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs7151404	0.96[CHB][hapmap];0.85[ASN][1000 genomes]
rs724263	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs734654	0.83[CHB][hapmap]
rs741575	0.82[CHB][hapmap]
rs8009433	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs8009937	0.85[AMR][1000 genomes]
rs8010212	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8018674	0.82[CHB][hapmap]
rs8019539	0.82[CHB][hapmap]
rs874025	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv565233	chr14:78366967-78390880	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78327800-78400600	Weak transcription	Colonic Mucosa	Colon
2	chr14:78346600-78375600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr14:78349200-78397200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:78349200-78407200	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:78349400-78378000	Weak transcription	Fetal Brain Female	brain
6	chr14:78350800-78375800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:78350800-78376200	Weak transcription	Brain Angular Gyrus	brain
8	chr14:78352600-78398800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:78354000-78375800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:78354000-78375800	Weak transcription	Gastric	stomach
11	chr14:78354400-78374400	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:78354600-78367400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:78354600-78368400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:78354600-78368600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:78354600-78375800	Weak transcription	Brain Substantia Nigra	brain
16	chr14:78354800-78379200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:78354800-78391600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:78355000-78374000	Weak transcription	Ovary	ovary
19	chr14:78355000-78375400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:78355000-78390800	Weak transcription	Spleen	Spleen
21	chr14:78355000-78391600	Weak transcription	Esophagus	oesophagus
22	chr14:78355200-78375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:78355400-78368400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:78355400-78370600	Weak transcription	Dnd41	blood
25	chr14:78355600-78398000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:78356000-78368800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:78356000-78393600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:78356000-78398600	Weak transcription	Fetal Intestine Large	intestine
29	chr14:78356200-78390800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr14:78356800-78368000	Weak transcription	Brain Hippocampus Middle	brain
31	chr14:78356800-78369000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:78356800-78373800	Weak transcription	Fetal Intestine Small	intestine
33	chr14:78356800-78373800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:78356800-78399600	Weak transcription	Thymus	Thymus
35	chr14:78357000-78398600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:78358200-78373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:78358600-78368200	Weak transcription	Left Ventricle	heart
38	chr14:78359200-78399600	Weak transcription	HSMMtube	muscle
39	chr14:78359200-78399800	Weak transcription	Primary B cells from cord blood	blood
40	chr14:78359400-78384200	Weak transcription	Right Ventricle	heart
41	chr14:78359600-78369200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:78359800-78390800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:78360000-78373800	Weak transcription	Lung	lung
44	chr14:78360600-78378800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr14:78360600-78379200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr14:78363600-78369200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr14:78363800-78369200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:78364000-78369800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:78364000-78398800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:78364200-78375400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links