Variant report

Variant	rs11159306
Chromosome Location	chr14:78347456-78347457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78338677..78341150-chr14:78346418..78348981,2	K562	blood:
2	chr14:78346765..78348633-chr14:78356131..78358979,2	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10130790	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10141465	0.82[ASN][1000 genomes]
rs10146144	0.86[ASN][1000 genomes]
rs1107991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11159290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11159291	0.87[CHB][hapmap]
rs11159294	0.83[CHB][hapmap]
rs11159298	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs11159300	0.84[CHB][hapmap]
rs11159301	0.84[CHB][hapmap]
rs11159302	0.86[CHB][hapmap]
rs11622297	0.81[CEU][hapmap]
rs11628049	1.00[CHB][hapmap]
rs12587361	0.84[CHB][hapmap]
rs12878904	0.88[CHB][hapmap]
rs12879726	0.84[CHB][hapmap]
rs12884153	0.84[CHB][hapmap]
rs12893815	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003600	0.87[CHB][hapmap]
rs2010591	0.83[CHB][hapmap]
rs2017927	0.96[CHB][hapmap];0.80[ASN][1000 genomes]
rs2052444	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2080814	0.94[ASN][1000 genomes]
rs2080815	0.84[CHB][hapmap]
rs2080816	0.87[CHB][hapmap]
rs2080817	0.87[CHB][hapmap]
rs2098583	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2098584	0.86[CHB][hapmap]
rs2287648	0.87[CHB][hapmap]
rs2364739	0.94[ASN][1000 genomes]
rs2364741	0.94[ASN][1000 genomes]
rs2364743	0.84[CHB][hapmap]
rs2364745	0.85[ASN][1000 genomes]
rs2364842	0.84[CHB][hapmap]
rs2886167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2886168	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs3783962	0.84[CHB][hapmap]
rs3783966	0.87[CHB][hapmap]
rs3783968	0.87[CHB][hapmap]
rs3783971	0.85[ASN][1000 genomes]
rs3783974	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs3825691	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3825692	0.94[ASN][1000 genomes]
rs4359362	0.84[CHB][hapmap]
rs4371094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4393507	0.83[CHB][hapmap]
rs4448861	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs4899677	0.83[CHB][hapmap]
rs4899678	0.87[CHB][hapmap]
rs4899679	0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4903654	0.84[CHB][hapmap]
rs4903655	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs4903656	0.87[CHB][hapmap]
rs4903658	0.84[CHB][hapmap]
rs4903660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4903662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4903663	0.87[CHB][hapmap]
rs4903664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574406	0.85[ASN][1000 genomes]
rs6574408	0.86[ASN][1000 genomes]
rs6574409	0.88[ASN][1000 genomes]
rs7145309	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7146020	0.82[CHB][hapmap]
rs7149884	0.87[CHB][hapmap]
rs7149911	0.87[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs7151404	0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs719049	0.84[CHB][hapmap]
rs724263	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs726538	0.83[CHB][hapmap]
rs741573	0.84[CHB][hapmap]
rs741574	0.87[CHB][hapmap]
rs741575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7493386	0.86[CHB][hapmap]
rs8004053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006218	0.84[ASN][1000 genomes]
rs8009433	0.88[CHB][hapmap]
rs8009937	0.81[ASN][1000 genomes]
rs8010212	0.90[ASN][1000 genomes]
rs8014296	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs8018674	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8019539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8022985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877561	0.86[CHB][hapmap]
rs962539	0.90[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
3	chr14:78314200-78348400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:78321800-78348400	Weak transcription	Placenta	Placenta
5	chr14:78322200-78353400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr14:78324000-78353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:78324200-78354800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:78326600-78352800	Weak transcription	Esophagus	oesophagus
9	chr14:78327200-78348600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr14:78327800-78400600	Weak transcription	Colonic Mucosa	Colon
11	chr14:78328000-78353400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:78329000-78347600	Weak transcription	Brain Anterior Caudate	brain
13	chr14:78329000-78348400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:78333400-78348600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:78334600-78353400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:78335800-78348400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:78335800-78358600	Weak transcription	HSMMtube	muscle
18	chr14:78336400-78354200	Weak transcription	Fetal Intestine Large	intestine
19	chr14:78339600-78353800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:78340000-78353400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:78340400-78353600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr14:78340600-78348200	Weak transcription	Fetal Muscle Leg	muscle
23	chr14:78340600-78353400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:78340600-78353400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr14:78340600-78353600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:78340600-78353600	Weak transcription	Dnd41	blood
27	chr14:78340800-78354200	Weak transcription	Primary B cells from cord blood	blood
28	chr14:78341000-78349800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:78342200-78353400	Weak transcription	Aorta	Aorta
30	chr14:78342200-78353400	Weak transcription	Fetal Intestine Small	intestine
31	chr14:78342600-78348200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:78342600-78352600	Weak transcription	Spleen	Spleen
33	chr14:78342800-78348200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:78342800-78353600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:78345000-78353600	Weak transcription	Liver	Liver
36	chr14:78345200-78350400	Enhancers	Brain Germinal Matrix	brain
37	chr14:78345400-78350800	Enhancers	Left Ventricle	heart
38	chr14:78345600-78349200	Weak transcription	Stomach Mucosa	stomach
39	chr14:78345600-78350200	Enhancers	Fetal Heart	heart
40	chr14:78345800-78348200	Weak transcription	Brain Angular Gyrus	brain
41	chr14:78345800-78348200	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:78345800-78348200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:78346000-78347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr14:78346000-78348200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:78346200-78347600	Weak transcription	Right Ventricle	heart
46	chr14:78346200-78348200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:78346200-78348400	Weak transcription	Brain Substantia Nigra	brain
48	chr14:78346400-78348600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:78346400-78348600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:78346400-78352800	Weak transcription	Primary T cells from cord blood	blood

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