Variant report

Variant	rs8012477
Chromosome Location	chr14:84741027-84741028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10134005	0.80[AMR][1000 genomes]
rs10137608	0.80[AMR][1000 genomes]
rs17119896	0.80[AMR][1000 genomes]
rs28399118	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28446157	0.80[ASN][1000 genomes]
rs3935697	0.80[ASN][1000 genomes]
rs4075208	0.80[AMR][1000 genomes]
rs7143199	0.80[AMR][1000 genomes]
rs8005901	0.80[ASN][1000 genomes]
rs8009583	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8012329	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8019836	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902161	chr14:84699866-84769903	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv832845	chr14:84726378-84900199	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84738600-84741200	Enhancers	Ovary	ovary
2	chr14:84740800-84741400	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr14:84741000-84741200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links