Variant report

Variant	rs8018693
Chromosome Location	chr14:81165784-81165785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81163145..81165806-chr14:81181268..81184097,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1197381	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12436064	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12589458	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12882090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590483	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590486	0.81[AMR][1000 genomes]
rs2590487	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs2590489	0.80[AMR][1000 genomes]
rs2596107	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2596112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2619657	0.80[AMR][1000 genomes]
rs2619666	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2630271	0.92[CEU][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs35178479	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36055485	0.81[EUR][1000 genomes]
rs6574600	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67713542	0.89[ASN][1000 genomes]
rs72690954	0.91[ASN][1000 genomes]
rs8022894	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs936579	0.96[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs977614	1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs9783629	0.87[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
4	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81160000-81168400	Weak transcription	Primary T cells from cord blood	blood
6	chr14:81162800-81166400	Weak transcription	GM12878-XiMat	blood
7	chr14:81163200-81177800	Weak transcription	A549	lung
8	chr14:81163600-81166200	Weak transcription	Thymus	Thymus
9	chr14:81165600-81169000	Strong transcription	Dnd41	blood

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