Variant report

Variant	rs1197381
Chromosome Location	chr14:81170713-81170714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81169740..81171464-chr3:149936210..149938859,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12436064	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12589458	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12882090	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2590484	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590485	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590486	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590487	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590488	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590489	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2596107	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2596112	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2619657	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2619666	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2619675	0.87[ASN][1000 genomes]
rs2630271	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35178479	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36055485	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55700935	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574600	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8018693	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8022894	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs936579	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs977614	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:81163200-81177800	Weak transcription	A549	lung
4	chr14:81166200-81180200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:81167400-81171000	Weak transcription	NHEK	skin
6	chr14:81167600-81174200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:81167600-81181400	Weak transcription	Fetal Thymus	thymus
8	chr14:81167800-81171200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:81168400-81171400	Weak transcription	HMEC	breast
10	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
11	chr14:81169000-81175600	Weak transcription	Dnd41	blood

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