Variant report

Variant	rs2619675
Chromosome Location	chr14:81189365-81189366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1197381	0.87[ASN][1000 genomes]
rs2590484	0.89[ASN][1000 genomes]
rs2590485	0.88[ASN][1000 genomes]
rs2590486	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2590487	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2590488	0.88[ASN][1000 genomes]
rs2590489	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2596107	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2619657	0.85[AMR][1000 genomes]
rs2630271	0.91[ASN][1000 genomes]
rs35178479	0.89[ASN][1000 genomes]
rs36055485	0.89[ASN][1000 genomes]
rs55700935	0.88[ASN][1000 genomes]
rs8022894	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs936579	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs977614	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182000-81206400	Weak transcription	Fetal Thymus	thymus
2	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:81185600-81192400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81185600-81208600	Weak transcription	Thymus	Thymus
5	chr14:81185800-81221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:81186200-81192200	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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