Variant report

Variant	rs55700935
Chromosome Location	chr14:81176020-81176021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1197381	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590484	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590486	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590487	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590488	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590489	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2596107	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619657	0.87[EUR][1000 genomes]
rs2619675	0.88[ASN][1000 genomes]
rs2630271	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35178479	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36055485	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8022894	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936579	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs977614	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81163200-81177800	Weak transcription	A549	lung
2	chr14:81166200-81180200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:81167600-81181400	Weak transcription	Fetal Thymus	thymus
4	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
5	chr14:81171000-81180600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:81172400-81185200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:81172600-81185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:81175600-81178600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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