Variant report

Variant	rs8022894
Chromosome Location	chr14:81185702-81185703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10498550	1.00[YRI][hapmap]
rs1197381	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12436064	0.81[AMR][1000 genomes]
rs12586869	1.00[YRI][hapmap]
rs12589458	0.82[AMR][1000 genomes]
rs12882090	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1992972	1.00[YRI][hapmap]
rs2371333	1.00[YRI][hapmap]
rs2590484	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590485	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590486	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590488	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590489	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2596107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596112	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2619657	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2619666	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2619675	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2630271	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35178479	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36055485	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55700935	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574600	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8005643	1.00[YRI][hapmap]
rs8018693	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs936579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs977614	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9783629	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81179200-81186200	Enhancers	Dnd41	blood
2	chr14:81182000-81206400	Weak transcription	Fetal Thymus	thymus
3	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:81185000-81185800	Enhancers	NHDF-Ad	bronchial
5	chr14:81185200-81185800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:81185400-81185800	Enhancers	NHEK	skin
7	chr14:81185600-81192400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:81185600-81208600	Weak transcription	Thymus	Thymus

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