Variant report

Variant	rs8024265
Chromosome Location	chr15:52335166-52335167
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52326795..52330431-chr15:52332202..52336988,5	K562	blood:
2	chr15:52310288..52313422-chr15:52332456..52335210,3	K562	blood:
3	chr15:52317535..52326388-chr15:52327451..52335331,11	K562	blood:
4	chr15:52326795..52330431-chr15:52334288..52336988,4	K562	blood:
5	chr15:52310288..52312356-chr15:52333090..52335210,2	K562	blood:
6	chr15:52310424..52313443-chr15:52334748..52338325,6	MCF-7	breast:
7	chr15:52308807..52313747-chr15:52329198..52338033,19	MCF-7	breast:
8	chr15:52333359..52335753-chr15:52337024..52338910,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000069956	Chromatin interaction
ENSG00000259438	Chromatin interaction
ENSG00000259398	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17611465	1.00[ASN][1000 genomes]
rs1972419	1.00[ASN][1000 genomes]
rs2554354	1.00[ASN][1000 genomes]
rs2554355	1.00[ASN][1000 genomes]
rs2570243	1.00[ASN][1000 genomes]
rs2593169	1.00[ASN][1000 genomes]
rs2623245	1.00[ASN][1000 genomes]
rs2623247	1.00[ASN][1000 genomes]
rs2623251	1.00[ASN][1000 genomes]
rs2623263	1.00[ASN][1000 genomes]
rs2623270	1.00[ASN][1000 genomes]
rs28501427	1.00[ASN][1000 genomes]
rs28718531	1.00[ASN][1000 genomes]
rs55860410	1.00[ASN][1000 genomes]
rs55922236	1.00[ASN][1000 genomes]
rs56049741	1.00[ASN][1000 genomes]
rs56186119	1.00[ASN][1000 genomes]
rs62015208	1.00[ASN][1000 genomes]
rs71472920	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv1050664	chr15:52265723-52342101	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52312800-52345400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:52314400-52359800	Weak transcription	Fetal Brain Male	brain
3	chr15:52325800-52342200	Weak transcription	HUVEC	blood vessel
4	chr15:52326800-52342800	Weak transcription	Fetal Brain Female	brain
5	chr15:52327000-52337200	Weak transcription	Primary B cells from cord blood	blood
6	chr15:52327000-52340600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:52327600-52340200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:52330000-52335400	Enhancers	HepG2	liver
9	chr15:52330600-52335400	Enhancers	Pancreas	Pancrea
10	chr15:52331000-52335400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:52331400-52335400	Enhancers	Brain Angular Gyrus	brain
12	chr15:52331800-52335400	Enhancers	Ovary	ovary
13	chr15:52332400-52348200	Weak transcription	Colonic Mucosa	Colon
14	chr15:52332600-52338200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:52332600-52340400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:52332600-52342400	Weak transcription	NHDF-Ad	bronchial
17	chr15:52332600-52349000	Weak transcription	Esophagus	oesophagus
18	chr15:52332600-52349400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:52332600-52350800	Weak transcription	Aorta	Aorta
20	chr15:52332600-52361800	Weak transcription	Gastric	stomach
21	chr15:52332800-52335400	Enhancers	Brain Substantia Nigra	brain
22	chr15:52332800-52336600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:52332800-52339600	Weak transcription	Fetal Intestine Large	intestine
24	chr15:52332800-52340400	Weak transcription	Brain Germinal Matrix	brain
25	chr15:52332800-52340400	Weak transcription	Placenta	Placenta
26	chr15:52332800-52344400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:52333000-52336600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:52333000-52336600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:52333000-52336600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:52333000-52337400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:52333000-52337600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr15:52333000-52337600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr15:52333000-52337800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:52333000-52337800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr15:52333000-52338000	Weak transcription	Thymus	Thymus
36	chr15:52333000-52338200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:52333000-52338200	Weak transcription	Fetal Thymus	thymus
38	chr15:52333000-52338800	Weak transcription	NHLF	lung
39	chr15:52333000-52339000	Weak transcription	Fetal Intestine Small	intestine
40	chr15:52333000-52339000	Weak transcription	Fetal Lung	lung
41	chr15:52333000-52339000	Weak transcription	Fetal Muscle Leg	muscle
42	chr15:52333000-52339200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:52333000-52339400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:52333000-52339600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:52333000-52340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:52333000-52340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:52333000-52341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr15:52333000-52341000	Weak transcription	HSMM	muscle
49	chr15:52333000-52344200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:52333000-52344400	Weak transcription	Left Ventricle	heart

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