Variant report

Variant	rs8033940
Chromosome Location	chr15:58724842-58724843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1077834	0.83[CEU][hapmap]
rs1077835	0.83[CEU][hapmap]
rs1800588	0.80[CEU][hapmap]
rs2070895	0.83[CEU][hapmap]
rs261333	0.87[JPT][hapmap]
rs261341	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs633695	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[EUR][1000 genomes]
rs6494005	0.87[JPT][hapmap]
rs7170361	0.81[EUR][1000 genomes]
rs8034802	0.91[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv2760372	chr15:58721447-58731153	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2761874	chr15:58724371-58730571	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58704600-58728800	Weak transcription	Thymus	Thymus
2	chr15:58716600-58725800	Weak transcription	Right Atrium	heart
3	chr15:58716600-58726600	Weak transcription	Esophagus	oesophagus
4	chr15:58718400-58726600	Weak transcription	Stomach Mucosa	stomach
5	chr15:58718600-58725000	Weak transcription	Fetal Lung	lung
6	chr15:58719600-58725800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:58722600-58731000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:58723600-58725000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:58723600-58725000	Enhancers	Fetal Intestine Large	intestine
10	chr15:58724000-58725800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:58724000-58725800	Weak transcription	Pancreas	Pancrea
12	chr15:58724200-58725000	Flanking Active TSS	Hela-S3	cervix
13	chr15:58724200-58726400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:58724200-58727000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:58724200-58727200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:58724400-58725000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:58724400-58725000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:58724400-58725000	Flanking Active TSS	Fetal Kidney	kidney
19	chr15:58724400-58725000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr15:58724400-58725000	Enhancers	K562	blood
21	chr15:58724400-58725400	Active TSS	Liver	Liver
22	chr15:58724400-58725600	Weak transcription	Fetal Intestine Small	intestine
23	chr15:58724400-58725600	Weak transcription	Right Ventricle	heart
24	chr15:58724400-58726200	Weak transcription	Fetal Thymus	thymus
25	chr15:58724400-58726600	Enhancers	Adipose Nuclei	Adipose
26	chr15:58724400-58726800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:58724400-58726800	Enhancers	HSMMtube	muscle
28	chr15:58724600-58725200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr15:58724600-58725200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr15:58724600-58725800	Weak transcription	Placenta	Placenta
31	chr15:58724600-58726200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:58724600-58731000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:58724800-58725000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr15:58724800-58725200	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr15:58724800-58725400	Flanking Active TSS	HepG2	liver
36	chr15:58724800-58725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:58724800-58725800	Weak transcription	HSMM	muscle
38	chr15:58724800-58726000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:58724800-58726400	Enhancers	A549	lung
40	chr15:58724800-58731200	Weak transcription	NHDF-Ad	bronchial
41	chr15:58724800-58732600	Weak transcription	Psoas Muscle	Psoas

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