Variant report

Variant	rs8035223
Chromosome Location	chr15:52086857-52086858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52046348..52048954-chr15:52084849..52087226,2	K562	blood:
2	chr1:163429652..163430349-chr15:52086238..52087036,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7164550	1.00[AMR][1000 genomes]
rs7168503	1.00[AMR][1000 genomes]
rs7168775	1.00[AMR][1000 genomes]
rs7180099	0.95[AFR][1000 genomes]
rs8034090	0.84[AFR][1000 genomes]
rs8038895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3411789	chr15:52052789-52087519	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
2	chr15:52052600-52106600	Weak transcription	HSMM	muscle
3	chr15:52053400-52090600	Weak transcription	Pancreas	Pancrea
4	chr15:52060200-52103400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:52060600-52087400	Weak transcription	Gastric	stomach
6	chr15:52060600-52088400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:52060600-52091000	Weak transcription	Right Ventricle	heart
8	chr15:52060800-52101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:52060800-52102600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:52060800-52105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:52061600-52112000	Weak transcription	NHLF	lung
12	chr15:52061800-52098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:52064400-52090400	Weak transcription	Left Ventricle	heart
14	chr15:52065600-52090600	Weak transcription	Spleen	Spleen
15	chr15:52065800-52091000	Weak transcription	Esophagus	oesophagus
16	chr15:52067200-52090600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:52067600-52090600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:52067800-52089000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:52069200-52091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:52074000-52090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:52074000-52100000	Weak transcription	NHDF-Ad	bronchial
22	chr15:52074800-52102800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:52075000-52088600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:52075000-52090600	Weak transcription	Dnd41	blood
25	chr15:52075600-52089000	Weak transcription	Aorta	Aorta
26	chr15:52076400-52098400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:52076600-52090400	Weak transcription	Primary B cells from cord blood	blood
28	chr15:52076600-52090400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:52076600-52090400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:52076600-52090400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:52076600-52090600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:52076600-52090600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:52076800-52090800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:52076800-52090800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:52076800-52104400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:52077000-52090400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:52077200-52098600	Weak transcription	Fetal Brain Male	brain
38	chr15:52079000-52098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:52079200-52089600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:52079200-52090600	Weak transcription	Fetal Thymus	thymus
41	chr15:52079200-52098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:52079400-52089000	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:52079400-52090600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:52079600-52088200	Weak transcription	Fetal Intestine Small	intestine
45	chr15:52079600-52090400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:52079800-52088600	Weak transcription	Thymus	Thymus
47	chr15:52080000-52089000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:52080000-52090600	Weak transcription	Brain Anterior Caudate	brain
49	chr15:52080000-52090600	Weak transcription	Ovary	ovary
50	chr15:52080000-52099000	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links